Package: primer 1.2.0

primer: Functions and Data for the Book, a Primer of Ecology with R

Functions are primarily functions for systems of ordinary differential equations, difference equations, and eigenanalysis and projection of demographic matrices; data are for examples.

Authors:M H H Stevens

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primer.pdf |primer.html✨
primer/json (API)
NEWS

# Install 'primer' in R:
install.packages('primer', repos = c('https://hankstevens.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hankstevens/primer/issues

Datasets:
  • BSsucc - Secondary succession data
  • CandG - Data drawn approximately from Collins and Glenn
  • ClostExp - Closterium Population Data
  • coneflower - Smooth coneflower data
  • coneflowerrecruits - Smooth coneflower new recruits
  • coneflowerseeds - Smooth coneflower seed data
  • moths - Moth Species Richness
  • ross - Weekly deaths from bubonic plague in Bombay in 1905-06
  • sparrows - Song Sparrow Data Set
  • weeds - Percent cover of six perennial herbaceous plants

On CRAN:

5.91 score 14 stars 117 scripts 715 downloads 237 mentions 33 exports 37 dependencies

Last updated 3 years agofrom:945f7bb511. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 12 2024
R-4.5-winNOTEOct 12 2024
R-4.5-linuxNOTEOct 12 2024
R-4.4-winNOTEOct 12 2024
R-4.4-macNOTEOct 12 2024
R-4.3-winNOTEOct 12 2024
R-4.3-macNOTEOct 12 2024

Exports:alogisticbip_stabilitycat_functionchessonclogisticcompcolcompcolMdlogisticdlvcomp2gotellihanskiigplandelevinslvcomp2lvcomp3lvcompgLVCompGamesMetaSimone_over_fpimmlawtonplot_fPopSimpredpreyLVpredpreyRMschefferSIRbdSIRdSIRfSIRmodspec_mimicsuccnichethetalogistic

Dependencies:clicolorspacecpp11deSolvedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Functions and data for "A Primer of Ecology with R"primer-package primer
Logistic growth with the Allee effectalogistic
Bipartite network propertiesbip_stability
Secondary succession dataBSsucc
Data drawn approximately from Collins and Glenn (1991)CandG
A Cat Functioncat_function
Two-species model of the storage effectchesson
Continuous Logistic Growthclogistic
Closterium Population DataClostExp
Two-species Competition-colonization Metapopulation Modelcompcol
Multi-species Competition-colonization Model, With Habitat DestructioncompcolM
Smooth coneflower dataconeflower
Smooth coneflower new recruitsconeflowerrecruits
Smooth coneflower seed dataconeflowerseeds
Discrete Logistic Growthdlogistic
Discrete Logistic Competitiondlvcomp2
Propagule Rain Metapopulation Modelgotelli
Core-satellite Metapopulation Modelhanski
A Lotka-Volterra Model of Intraguild Predationigp
A Metapopulation Model with Habitat Destructionlande
Classic Metapopulation Modellevins
Two Species Lotka-Volterra Competitionlvcomp2
Three Species Lotka-Volterra Competitionlvcomp3
A General Lotka-Volterra Competition Modellvcompg
Lotka-Volterra Competition GamesLVCompGames
Simulation of Stochastic Metapopulation ModelsMetaSim
Moth Species Richnessmoths
Function to generate 1/f noise.one_over_f
Analysis of Jacobian Lotka-Volterra Food Web Matricespimmlawton
plot_fplot_f
Population SimulatorPopSim
The Lotka-Volterra Predator-prey ModelpredpreyLV
Rosenzweig-MacArthur Predator-prey ModelpredpreyRM
Weekly deaths from bubonic plague in Bombay in 1905-06ross
A resource-based model of alternative stable statesscheffer
The S-I-R Epidemilogical Disease Model with Births and DeathsSIRbd
The S-I-R Epidemilogical Disease ModelSIRd
The S-I-R Epidemilogical Disease Model with Frequency Dependent TransmissionSIRf
The S-I-R Epidemilogical Disease ModelSIRmod
Song Sparrow Data Setsparrows
Function to mimic the power spectrum of an observed time series.spec_mimic
A Four-state model of Successional Dynamicssuccniche
Continuous Theta-Logistic Growththetalogistic
Percent cover of six perennial herbaceous plantsweeds